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干旱区科学  2016, Vol. 8 Issue (2): 284-292    DOI: 10.1007/s40333-015-0092-2
  学术论文 本期目录 | 过刊浏览 | 高级检索 |
Microbial diversity in the saline-alkali soil of a coastal Tamarix chinensis woodland at Bohai Bay, China
LIU Wanqiu1,2,3, ZHANG Wei1,2, LIU Guangxiu1,2*, ZHANG Yanhua3, ZHANG Gaosen1,2
1 Key Laboratory of Desert and Desertification, Cold and Arid Regions Environmental and Engineering Research Institute, Chinese Academy of Sciences, Lanzhou 730000, China;
2 Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Gansu Province, Lanzhou 730000, China;
3 Ocean and Fishery Bureau of Changyi, Changyi 261300, China
Microbial diversity in the saline-alkali soil of a coastal Tamarix chinensis woodland at Bohai Bay, China
LIU Wanqiu1,2,3, ZHANG Wei1,2, LIU Guangxiu1,2*, ZHANG Yanhua3, ZHANG Gaosen1,2
1 Key Laboratory of Desert and Desertification, Cold and Arid Regions Environmental and Engineering Research Institute, Chinese Academy of Sciences, Lanzhou 730000, China;
2 Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Gansu Province, Lanzhou 730000, China;
3 Ocean and Fishery Bureau of Changyi, Changyi 261300, China
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摘要 Soil salinization or alkalization is a form of soil desertification. Coastal saline-alkali soil represents a type of desert and a key system in the network of ecosystems at the continent-ocean interface. Tamarix chinensis is a drought-tolerant plant that is widely distributed in the coastal saline-alkali soil of Bohai Bay, China. In this study, we used 454 pyrosequencing techniques to investigate the characteristics and distribution of the microbial diversity in coastal saline-alkali soil of the T. chinensis woodland at Bohai Bay. A total of 20,315 sequences were obtained, representing 19 known bacterial phyla and a large proportion of unclassified bacteria at the phylum level. Proteobacteria, Acidobacteria and Actinobacteria were the predominant phyla. The coverage of T. chinensis affected the microbial composition. At the phylum level, the relative abundance of γ-Proteobacteria and Bacteroidetes decreased whereas Actinobacteria increased with the increasing coverage of T. chinensis. At the genus level, the proportions of Steroidobacter, Lechevalieria, Gp3 and Gp4 decreased with the increase of the vegetation coverage whereas the proportion of Nocardioides increased. A cluster analysis showed that the existing T. chinensis changed the niches for the microorganisms in the coastal saline-alkali soil, which caused changes in the microbial community. The analysis also distinguished the microbial community structure of the marginal area from those of the dense area and sparse area. Furthermore, the results also indicated that the distance to the seashore line could also affect certain groups of soil bacteria in this coastal saline-alkali soil, such as the family Cryomorphaceae and class Flavobacteria, whose population decreased as the distance increased. In addition, the seawater and temperature could be the driving factors that affected the changes.
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关键词:  gravel mulch  wind speed profile  sand transport  drag velocity    
Abstract: Soil salinization or alkalization is a form of soil desertification. Coastal saline-alkali soil represents a type of desert and a key system in the network of ecosystems at the continent-ocean interface. Tamarix chinensis is a drought-tolerant plant that is widely distributed in the coastal saline-alkali soil of Bohai Bay, China. In this study, we used 454 pyrosequencing techniques to investigate the characteristics and distribution of the microbial diversity in coastal saline-alkali soil of the T. chinensis woodland at Bohai Bay. A total of 20,315 sequences were obtained, representing 19 known bacterial phyla and a large proportion of unclassified bacteria at the phylum level. Proteobacteria, Acidobacteria and Actinobacteria were the predominant phyla. The coverage of T. chinensis affected the microbial composition. At the phylum level, the relative abundance of γ-Proteobacteria and Bacteroidetes decreased whereas Actinobacteria increased with the increasing coverage of T. chinensis. At the genus level, the proportions of Steroidobacter, Lechevalieria, Gp3 and Gp4 decreased with the increase of the vegetation coverage whereas the proportion of Nocardioides increased. A cluster analysis showed that the existing T. chinensis changed the niches for the microorganisms in the coastal saline-alkali soil, which caused changes in the microbial community. The analysis also distinguished the microbial community structure of the marginal area from those of the dense area and sparse area. Furthermore, the results also indicated that the distance to the seashore line could also affect certain groups of soil bacteria in this coastal saline-alkali soil, such as the family Cryomorphaceae and class Flavobacteria, whose population decreased as the distance increased. In addition, the seawater and temperature could be the driving factors that affected the changes.
Key words:  gravel mulch    wind speed profile    sand transport    drag velocity
收稿日期:  2015-05-11      修回日期:  2015-10-22           出版日期:  2016-04-01      发布日期:  2015-10-26      期的出版日期:  2016-04-01
基金资助: 

This study was funded by the National Natural Science Foundation of China (31470544, 41271265), a special financial grant from the China Postdoctoral Science Foundation (2013T60900), and the Science and Technology Projects in Gansu Province (1304NKCA135).

通讯作者:  LIU Guangxiu    E-mail:  liugx@lzb.ac.cn
引用本文:    
LIU Wanqiu, ZHANG Wei, LIU Guangxiu, ZHANG Yanhua, ZHANG Gaosen. Microbial diversity in the saline-alkali soil of a coastal Tamarix chinensis woodland at Bohai Bay, China[J]. 干旱区科学, 2016, 8(2): 284-292.
LIU Wanqiu, ZHANG Wei, LIU Guangxiu, ZHANG Yanhua, ZHANG Gaosen. Microbial diversity in the saline-alkali soil of a coastal Tamarix chinensis woodland at Bohai Bay, China. Journal of Arid Land, 2016, 8(2): 284-292.
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Bull A T, Asenjo J A. 2013. Microbiology of hyper-arid environments: recent insights from the Atacama Desert, Chile. Antonie Van Leeuwenhoek, 103(6): 1173–1179.

Cao D, Shi F, Ruan W, et al. 2011. Seasonal changes in and relationship between soil microbial and microfaunal communities in a Tamarix chinensis community in the Yellow River Delta. African Journal of Biotechnology, 10(80): 18425–18432.

Carpentier A, Como S, Dupuy C, et al. 2013. Feeding ecology of Liza spp. in a tidal flat: Evidence of the importance of primary production (biofilm) and associated meiofauna. Journal of Sea Research, 92: 86–91.

Chanal A, Chapon V, Benzerara K, et al. 2006. The desert of Tataouine: an extreme environment that hosts a wide diversity of microorganisms and radiotolerant bacteria. Environmental Microbiology, 8(3): 514–525.

Chen M, Zhu J W, Shen J D, et al. 2008. The effect of Tamarix spp canopy on the soil enzyme activities and the microbial quantity. Acta Agriculturae Boreali-occidentalis Sinica, 17(2): 212–217. (in Chinese)

Cole J R, Chai B, Farris R J, et al. 2007. The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data. Nucleic Acids Research, 35: D169–D172.

Cottrell M T, Kirchman D L. 2000. Natural assemblages of marine proteobacteria and members of the Cytophaga-Flavobacter cluster consuming low-and high-molecular-weight dissolved organic matter. Applied and Environmental Microbiology, 66(4): 1692–1697.

Dhar P P, Al-Qarawi A A, Mridha M A U. 2015. Arbuscular mycorrhizal fungal association in Asteraceae plants growing in the arid lands of Saudi Arabia. Journal of Arid Land, 7(5): 676–686.

Dong Y M, Zhao C C, Cai Y, et al. 2013. Optimization of reed-specific degrading bacteria by response surfaces for remediation of crude oil-polluted soil in Xinjiang, China. Journal of Arid Land, 5(3): 408–414.

Doroshenko E A, Zenova G M, Zvyagintsev D G, et al. 2005. Spore germination and mycelial growth of streptomycetes at different humidity levels. Microbiology, 74(6): 690–694.

Finkel O M, Burch A Y, Elad T, et al. 2012. Distance-decay relationships partially determine diversity patterns of phyllosphere bacteria on Tamarix trees across the Sonoran Desert. Applied and Environmental Microbiology, 78(17): 6187–6193.

Gaskin J F, Schaal B A. 2002. Hybrid Tamarix widespread in US invasion and undetected in native Asian range. Proceedings of the National Academy of Sciences of the Unites States of America, 99(17): 11256–11259.

Graue J, Engelen B, Cypionka H. 2011. Degradation of cyanobacterial biomass in anoxic tidal-flat sediments: a microcosm study of metabolic processes and community changes. The ISME Journal, 6(3): 660–669.

Gray J P, Herwig R P. 1996. Phylogenetic analysis of the bacterial communities in marine sediments. Applied and Environmental Microbiology, 62(11): 4049–4059.

Hou X Y, Wu T, Yu L J, et al. 2012. Characteristics of multi-temporal scale variation of vegetation coverage in the circum Bohai Bay region, 1999–2009. Acta Ecologica Sinica, 32(6): 297–304. (in Chinese)

Jiang Z M, Chen Y X, Bao Y. 2012. Population genetic structure of Tamarix chinensis in the Yellow River Delta, China. Plant Systematics and Evolution, 298(1): 147–153.

Kim B S, Kim B K, Lee J H, et al. 2008. Rapid phylogenetic dissection of prokaryotic community structure in tidal flat using pyrosequencing. The Journal of Microbiology, 46(4): 357–363.

Kim B S, Oh H M, Kang H, et al. 2004. Remarkable bacterial diversity in the tidal flat sediment as revealed by 16S rDNA analysis. Journal of Microbiology and Biotechnology, 14(1): 205–211.

Kim S J, Park S J, Cha I T, et al. 2014. Metabolic versatility of toluene-degrading, iron-reducing bacteria in tidal flat sediment, characterized by stable isotope probing-based metagenomic analysis. Environmental Microbiology, 16(1): 189–204.

Kirchman D L. 2002. The ecology of Cytophaga-Flavobacteria in aquatic environments. FEMS Microbiology Ecology, 39(2): 91–100.

Köpke B, Wilms R, Engelen B, et al. 2005. Microbial diversity in coastal subsurface sediments: a cultivation approach using various electron acceptors and substrate gradients. Applied and Environmental Microbiology, 71(12): 7819–7830.

Ksouri R, Falleh H, Megdiche W, et al. 2009. Antioxidant and antimicrobial activities of the edible medicinal halophyte Tamarix gallica L. and related polyphenolic constituents. Food and Chemical Toxicology, 47(8): 2083–2091.

Kuske C R, Ticknor L O, Miller M E, et al. 2002. Comparison of soil bacterial communities in rhizospheres of three plant species and the interspaces in an arid grassland. Applied and Environmental Microbiology, 68(4):1854–1863.

Lefahal M, Benahmed M, Louaar S, et al. 2010. Antimicrobial activity of Tamarix gallica L. extracts and isolated flavonoids. Advances in Natural and Applied Sciences, 4(3): 289–292.

Llobet-Brossa E, Rosselló-Mora R, Amann R. 1998. Microbial community composition of Wadden Sea sediments as revealed by fluorescence in situ hybridization. Applied and Environmental Microbiology, 64(7): 2691–2696.

Ma X M, Yin L K, Chen L. 2008. Study on vertical distribution of microorganismsin rhizosphere of populuseuphratica and Tamarix sp. in the lower reaches of the Tarim River, Xinjiang. Arid Zone Research, 25(2): 183–189. (in Chinese)

Ma X M, Yin L K. 2009. The seasonal changes of plants’ rhizosphere and non-rhizosphere microorganism in the desert riparian forest. Journal of Arid Land Resources and Environment, 23(5): 165–171. (in Chinese)

Margulies M, Egholm M, Altman W E, et al. 2005. Genome sequencing in open microfabricated high-density picoliter reactors. Nature, 437: 376–380.

McKenna P, Hoffmann C, Minkah N, et al. 2008. The macaque gut microbiome in health, lentiviral infection, and chronic enterocolitis. PLoS Pathogens, 8(4): e20.

Naether A, Foesel B U, Naegele V, et al. 2012. Environmental factors affect acidobacterial communities below the subgroup level in grassland and forest soils. Applied and Environmental Microbiology, 78(20): 7398–7406.

Nagy M L, Pérez A, Garcia-Pichel F. 2005. The prokaryotic diversity of biological soil crusts in the Sonoran Desert (Organ Pipe Cactus National Monument, AZ). FEMS Microbiology Ecology, 54(2): 233–245.

Orlando J, Alfaro M, Bravo L, et al. 2010. Bacterial diversity and occurrence of ammonia-oxidizing bacteria in the Atacama Desert soil during a “desert bloom” event. Soil Biology and Biochemistry, 42(7): 1183–1188.

Pruesse E, Quast C, Knittel K, et al. 2007. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Research, 35(21): 7188–7196.

Qvit-Raz N, Finkel O M, Al-Deeb T M, et al. 2012. Biogeographical diversity of leaf-associated microbial communities from salt-secreting Tamarix trees of the Dead Sea region. Research in Microbiology, 163(2): 142–150.

Roesch L F, Fulthorpe R R, Riva A, et al. 2007. Pyrosequencing enumerates and contrasts soil microbial diversity. The ISME Journal, 1: 283–290.

Saïdana D, Mahjoub M A, Boussaada O, et al. 2008. Chemical composition and antimicrobial activity of volatile compounds of Tamarix boveana (Tamaricaceae). Microbiological Research, 163(4): 445–455.

Saul-Tcherkas V, Steinberger Y. 2011. Soil microbial diversity in the vicinity of a Negev Desert shrub—Reaumuria negevensis. Microbial Ecology, 61(1): 64–81.

Schloss P D, Gevers D, Westcott S L. 2011. Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies. PLoS One, 6(12): e27310.

Sultanova N, Makhmoor T, Abilov Z A, et al. 2001. Antioxidant and antimicrobial activities of Tamarix ramosissima. Journal of Ethnopharmacology, 78(2–3): 201–205.

Szabolcs I. 1992. Salinization of soil and water and its relation to desertification. Desertification Control Bulletin, 21: 27–32.

Thomas D S G, Middleton N J. 1993. Salinization: new perspectives on a major desertification issue. Journal of Arid Environments, 24(1): 95–105.

Urakawa H, Kita-Tsukamoto K, Ohwada K. 1999. Microbial diversity in marine sediments from Sagami Bay and Tokyo Bay, Japan, as determined by 16S rRNA gene analysis. Microbiology, 145(11): 3305–3315.

Uroz S, Buée M, Murat C, et al. 2010. Pyrosequencing reveals a contrasted bacterial diversity between oak rhizosphere and surrounding soil. Environmental Microbiology Reports, 2(2): 281–288.

Wilms R, Köpke B, Sass H, et al. 2006a. Deep biosphere-related bacteria within the subsurface of tidal flat sediments. Environmental Microbiology, 8(4): 709–719.

Wilms R, Sass H, Köpke B, et al. 2006b. Specific bacterial, archaeal, and eukaryotic communities in tidal-flat sediments along a vertical profile of several meters. Applied and Environmental Microbiology, 72(4): 2756–2764.

Woyke T, Chertkov O, Lapidus A, et al. 2011. Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262T). Standards in Genomic Sciences, 5(1): 21–29.

Yu Y, Lee C, Kim J, et al. 2005. Group-specific primer and probe sets to detect methanogenic communities using quantitative real-time polymerase chain reaction. Biotechnology and Bioengineering, 89(6): 670–679.

Zhang T, Shao M F, Ye L. 2011. 454 Pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plants. The ISME Journal, 6(6): 1137–1147.

Zhang W, Zhang G S, Liu G X, et al. 2012. Bacterial diversity and distribution in the southeast edge of the Tengger Desert and their correlation with soil enzyme activities. Journal of Environmental Sciences, 24(11): 2004–2011.

Zhao X L, Zhou G S, Lv G H. 2009. The study on soil microbial characteristic under different types of vegetation in Liaohe Delta. Chinese Journal of Soil Science, 40(6): 1266–1269. (in Chinese)

Zhu G R, Xu X G, Ma Z W, et al. 2012. Spatial dynamics and zoning of coastal land-use change along Bohai Bay, China, during 1979–2008. Journal of Coastal Research, 28(5): 1186–1196.

Zhu H, Zhao C Y, Li J, et al. 2008. Distribution characteristics of soil MBC and relevant factors in woodland of Tamarix Ramasissima, central Asia. Acta Pedologica Sinica, 45(2): 375–379. (in Chinese)
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